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Recombination Sites | |
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Internal Transposable Elements | |
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Internal Repeats | |
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| Name: IS10L |
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| Family: IS4 Group: IS10 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Shigella flexneri | | |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 17 bp) |  | CTGATGAATCCCCTAAT |
| IRR (Length: 22 bp) | | CTGAGAGATCCCCTCATAATTT |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
CTGATGAATC CCCTAATGAT TTTTATCAAA ATCATTAAGT TAAGGTAGAT ACACATCTTG TCATATGATC AAATGGTTTC GCCAAAAATC AATAATCAGA 100
CAACAAAATG TGCGAACTCG ATATTTTACA CGACTCTCTT TACCAATTCT GCCCCGAATT ACACTTAAAA CGACTCAACA GCTTAACGTT GGCTTGCCAC 200
GCCTTACTTG ACTGTAAAAC TCTCACTCTT ACCGAACTTG GCCGTAACCT GCCAACCAAA GCGAGAACAA AACATAACAT CAAACGAATC GACCGATTGT 300
TAGGTAATCG TCACCTCCAC AAAGAGCGAC TCGCTGTATA CCGTTGGCAT GCTAGCTTTA TCTGTTCGGG CAATACGATG CCCATTGTAC TTGTTGACTG 400
GTCTGATATC CGTGAGCAAA AACGGCTTAT GGTATTGCGA GCTTCAGTCG CACTACACGG TCGTTCTGTT ACTCTTTATG AGAAAGCGTT CCCGCTTTCA 500
GAGCAATGTT CAAAGAAAGC TCATGACCAA TTTCTAGCCG ACCTTGCGAG CATTCTACCG AGTAACACCA CACCGCTCAT TGTCAGTGAT GCTGGCTTTA 600
AAGTGCCATG GTATAAATCC GTTGAGAAGC TGGGTTGGTA CTGGTTAAGT CGAGTAAGAG GAAAAGTACA ATATGCAGAC CTAGGAGCGG AAAACTGGAA 700
ACCTATCAGC AACTTACATG ATATGTCATC TAGTCACTCA AAGACTTTAG GCTATAAGAG GCTGACTAAA AGCAATCCAA TCTCATGCCA AATTCTATTG 800
TATAAATCTC GCTCTAAAGG CCGAAAAAAT CAGCGCTCGA CACGGACTCA TTGTCACCAC CCGTCACCTA AAATCTACTC AGCGTCGGCA AAGGAGCCAT 900
GGATTCTAGC AACTAACTTA CCTGTTGAAA TTCGAACACC CAAACAACTT GTTAATATCT ATTCGAAGCG AATGCAGATT GAAGAAACCT TCCGAGACTT 1000
GAAAAGTCCT GCCTACGGAC TAGGCCTACG CCATAGCCGA ACGAGCAGCT CAGAGCGTTT TGATATCATG CTGCTAATCG CCCTGATGCT TCAACTAACA 1100
TGTTGGCTTG CGGGCGTTCA TGCTCAGAAA CAAGGTTGGG ACAAGCACTT CCAGGCTAAC ACAGTCAGAA ATCGAAACGT ACTCTCAACA GTTCGCTTAG 1200
GCATGGAAGT TTTGCGGCAT TCTGGCTACA CAATAACAAG GGAAGACTCA CTCGTGGCTG CAACCCTGCT TACTCAAAAT CTATTCACAC ATGGTTACGT 1300
TTTGGGGAAA TTATGAGGGG ATCTCTCAG
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnp |
IS10L |
108-1316 |
Transposase |
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| Gene Name |
Protein Name |
Associated TE |
Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS10L |
1209 |
108-1316 |
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| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD
IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI
SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWILATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS
PAYGLGLRHS RTSSSERFDI MLLIALMLQL TCWLAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED SLVAATLLTQ NLFTHGYVLG
KL
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| References |
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Chalmers R, Sewitz S, Lipkow K, Crellin P. Complete nucleotide sequence of Tn10. J Bacteriol. 2000 May;182(10):2970-2. doi: 10.1128/jb.182.10.2970-2972.2000. PubMed ID: 10781570
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