TnFinder



Tn3 Transposon Finder
Tn3 Transposon Finder (Tn3_finder) is a program for the automatic prediction of transposable elements of the Tn3 family in bacteria and archaea. It compares bacterial and archaeal genome sequences to custom Tn3 transposase+resolvase databases. Results are written in report files and pre-annotated GenBank files to help in subsequent manual curation.

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Composite Transposon Finder
Composite Transposon Finder (TnComp_finder) is a program for the prediction of putative composite transposons in bacterial and archaeal genomes based on insertion sequence replicas in a relatively short span. It works by comparing nucleotide sequences from bacterial and archaeal genomes to a custom transposon database. Results are written in report files and pre-annotated GenBank files to help in subsequent manual curation.

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IS Associated with Antibiotic Resistance Genes Finder
IS Associated with Antibiotic Resistance Genes Finder (ISAbR_finder) is a program for the automatic prediction of antibiotic resistance genes associated with known IS elements derived from the ISfinder database. It works by comparing IS nucleotide sequences from bacterial and archaeal genomes to a custom antibiotic resistance database. Results are written in report files and pre-annotated GenBank files to help in subsequent manual curation.

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